EdbMosaic.h

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#ifndef ROOT_EdbMosaic
#define ROOT_EdbMosaic
 
//                                                                      //
// EdbMosaic                                                            //
//                                                                      //
//                                                                      //
#include <TFile.h>
#include <TEnv.h>
#include "EdbID.h"
#include "EdbMosaicIO.h"
#include "EdbMosaicPath.h"
#include "EdbFragmentAlignment.h"
#include "EdbPattern.h"
#include "EdbLayer.h"
#include "EdbViewMap.h"
#include "EdbRunAccess.h"
 
//______________________________________________________________________________
class EdbMosaicAl : public TObject {
  private:
 
    //TObjArray eVH;    // list of all views headers
 
    EdbID eID;
    EdbRunAccess  eRAW;      // run access for raw data
    EdbCell2      eCF[3];    // grope headers by cells for sides 0,1,2
    EdbMosaicIO   eMIO;      // mosaic output
    
    EdbLayer      *eCorrMap[3]; // corrections for sides 0,1,2
    
    float   eR0;              // radius for neighbours search (~diagonal view size)
    int     eMinPeak;         // minimum coincidences to accept alignment
    AlPar   eAP;              // alignment parameters
    TH2F   *eH_XY[3];         // global histograms after the alignments (only 1 and 2 for now)
    bool    eDoSaveAlignments; // flag to save individual alignments
    bool    eNoAlign;          // flag to skip alignments (HTS data case)
   
  public:
    EdbMosaicAl(); //{eCorrMap[0]=eCorrMap[1]=eCorrMap[2]=0;}
    virtual ~EdbMosaicAl();
    
    void InitH2( const TEnv &env );
    void FormFragments( float fx, float fy, TObjArray &harr );
    void AlignFragments();
    void AlignFragment( EdbPattern &pf, TObjArray &a);
    int  ViewSideAl0(EdbPattern &p1, EdbPattern &p2);
    void AlignSpot(TObjArray &parr, EdbMosaicPath &mp);    
    void ProcRun( EdbID id, const TEnv &cenv );
 
    void AlignFragments_new();
    void ReadPatterns( EdbFragmentAlignment &fa );
    void SetAlPar( const TEnv &env, AlPar &ap );
    void FillHXY( const EdbPattern &pf, TH2F &h );
    
    ClassDef(EdbMosaicAl,1)  //Mosaic alignment
};
 
 
#endif /* ROOT_EdbMosaic */